Keyword Arguments for pyscamp Methods

pyscamp methods support several different keyword arguments.

threshold=[float]:

Distance threshold used for various profile types, correlations found below this threshold will be ignored

pearson=[bool]:

Output Pearson Correlation rather than Z-normalized euclidean distance

threads=[int]:

Number of CPU threads to use with SCAMP (if using gpus it is recommended to not use this flag)

gpus=[list of integers]:

Cuda device ids of gpus to run on, by default we run on all gpus if you have any.

precision=[string]:

One of [‘single’, ‘mixed’, ‘double’, ‘ultra’] default is double precision, ultra and double precision are supported on CPU and GPU, mixed and single precision are only supported on GPU.

mwidth=[int]:

For matrix summaries, the width of the output matrix (default 50)

mheight=[int]:

For matrix summaries, the height of the output matrix (default 50)

verbose=[bool]:

Enable verbose output. This will log to stdout. (default False)